Detailed information of evm.model.Chr01.6385 in Hemicorallium imperiale

Genomic Location: Chr01:137522901...137565425
NR annotation: CAB3979816.1, Spermidine synthase [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.6385 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P19623Spermidine synthase OS=Homo sapiens OX=9606 GN=SRM PE=1 SV=1
Q64674Spermidine synthase OS=Mus musculus OX=10090 GN=Srm PE=1 SV=1
Q9XY92Spermidine synthase OS=Dictyostelium discoideum OX=44689 GN=spsA PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002495 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01564
all species →
Spermine_synthSpermine/spermidine synthase domainDomainInterproscan
PF17284
all species →
Spermine_synt_NSpermidine synthase tetramerisation domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR037163
all species →
Homologous_superfamilySpermidine synthase, tetramerisation domain superfamilyInterproscan
IPR029063
all species →
Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR001045
all species →
FamilySpermidine/spermine synthasesInterproscan
IPR030374
all species →
DomainPolyamine biosynthesis domainInterproscan
IPR035246
all species →
DomainSpermidine synthase, tetramerisation domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11558
all species →
SPERMIDINE/SPERMINE SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →
Molecular Functioncatalytic activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr01.6385.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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