Detailed information of evm.model.Chr01.6599 in Hemicorallium imperiale

Genomic Location: Chr01:143078763...143150182
NR annotation: XP_046853262.1, autophagy-related protein 16-1-like isoform X3 [Xenia sp. Carnegie-2017]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.6599 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q676U5Autophagy-related protein 16-1 OS=Homo sapiens OX=9606 GN=ATG16L1 PE=1 SV=2
Q5RAC9Autophagy-related protein 16-1 OS=Pongo abelii OX=9601 GN=ATG16L1 PE=2 SV=1
Q8C0J2Autophagy-related protein 16-1 OS=Mus musculus OX=10090 GN=Atg16l1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005175 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08614
all species →		ATG16Autophagy protein 16 (ATG16)Coiled-coilInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR013923
all species →		DomainAutophagy-related protein 16 domainInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR045160
all species →		FamilyAutophagy-related protein 16Interproscan
IPR020472
all species →		RepeatG-protein beta WD-40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19878
all species →		AUTOPHAGY PROTEIN 16-LIKEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000045
all species →		Biological Processautophagosome assemblyInterproscan
GO:0000421
all species →		Cellular Componentautophagosome membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K17890ATG16L1; autophagy-related protein 16-1-Mitochondrial biogenesisko03029deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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