Detailed information of evm.model.Chr01.6696 in Hemicorallium imperiale

Genomic Location: Chr01:145792435...145794571
NR annotation: CAB3985001.1, transcription factor Sox-3-like, partial [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr01.6696 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P0E1Transcription factor Sox-2 OS=Danio rerio OX=7955 GN=sox2 PE=2 SV=1
Q6NVN0Transcription factor Sox-2 OS=Xenopus tropicalis OX=8364 GN=sox2 PE=2 SV=1
P55863Transcription factor Sox-3-A OS=Xenopus laevis OX=8355 GN=sox3-a PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000488 (this species only)
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan
PF12336
all species →		SOXpSOX transcription factorFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050140
all species →		FamilySRY-related HMG-box transcription factorsInterproscan
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR022097
all species →		FamilyTranscription factor SOXInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10270
all species →		SOX TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653
all species →		Biological Processanatomical structure morphogenesisInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr01.6696.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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