Genomic Location: Chr01:118780...120211
NR annotation: CAA0105667.1, Exodeoxyribonuclease III [BD1-7 clade bacterium]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr01.7 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| P44318 | Exodeoxyribonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=xthA PE=3 SV=1 |
| P09030 | Exodeoxyribonuclease III OS=Escherichia coli (strain K12) OX=83333 GN=xthA PE=1 SV=4 |
| P0A1B0 | Exodeoxyribonuclease III OS=Salmonella typhi OX=90370 GN=xthA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0017443 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00293 all species → | NUDIX | NUDIX domain | Domain | Interproscan |
| PF03372 all species → | Exo_endo_phos | Endonuclease/Exonuclease/phosphatase family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000086 all species → | Domain | NUDIX hydrolase domain | Interproscan |
| IPR036691 all species → | Homologous_superfamily | Endonuclease/exonuclease/phosphatase superfamily | Interproscan |
| IPR037493 all species → | Family | Exodeoxyribonuclease III-like | Interproscan |
| IPR020084 all species → | Conserved_site | NUDIX hydrolase, conserved site | Interproscan |
| IPR015797 all species → | Homologous_superfamily | NUDIX hydrolase-like domain superfamily | Interproscan |
| IPR020847 all species → | Binding_site | AP endonuclease 1, binding site | Interproscan |
| IPR004808 all species → | Family | AP endonuclease 1 | Interproscan |
| IPR020848 all species → | Conserved_site | AP endonuclease 1, conserved site | Interproscan |
| IPR005135 all species → | Domain | Endonuclease/exonuclease/phosphatase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43250 all species → | EXODEOXYRIBONUCLEASE III | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0008311 all species → | Molecular Function | double-stranded DNA 3'-5' DNA exonuclease activity | Interproscan |
| GO:0016787 all species → | Molecular Function | hydrolase activity | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0004519 all species → | Molecular Function | endonuclease activity | Interproscan |
| GO:0004518 all species → | Molecular Function | nuclease activity | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
evm.model.Chr01.7.Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
