Gene detail

Detailed information of evm.model.Chr01.793 in Hemicorallium imperiale

Genomic Location: Chr01:20452387...20487128
NR annotation: CAB3996803.1, probable 28S ribosomal S10, mitochondrial [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr01.793 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P82670	Small ribosomal subunit protein uS10m OS=Bos taurus OX=9913 GN=MRPS10 PE=1 SV=2
P82664	Small ribosomal subunit protein uS10m OS=Homo sapiens OX=9606 GN=MRPS10 PE=1 SV=2
Q5RFM3	Small ribosomal subunit protein uS10m OS=Pongo abelii OX=9601 GN=MRPS10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001920 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00338 all species →	Ribosomal_S10	Ribosomal protein S10p/S20e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040055 all species →	Family	Small ribosomal subunit protein uS10m	Interproscan
IPR027486 all species →	Domain	Small ribosomal subunit protein uS10 domain	Interproscan
IPR036838 all species →	Homologous_superfamily	Small ribosomal subunit protein uS10 domain superfamily	Interproscan
IPR001848 all species →	Family	Small ribosomal subunit protein uS10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13334 all species →	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02946	RP-S10, MRPS10, rpsJ; small subunit ribosomal protein S10	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.