Gene detail

Detailed information of evm.model.Chr02.1785 in Hemicorallium imperiale

Genomic Location: Chr02:49601685...49703866
NR annotation: CAB4008744.1, collagen alpha-1(I) chain-like, partial [Paramuricea clavata]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
P13941	Collagen alpha-1(III) chain OS=Rattus norvegicus OX=10116 GN=Col3a1 PE=2 SV=3
P08121	Collagen alpha-1(III) chain OS=Mus musculus OX=10090 GN=Col3a1 PE=1 SV=4
P12105	Collagen alpha-1(III) chain (Fragments) OS=Gallus gallus OX=9031 GN=COL3A1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF00095	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR036645	Homologous_superfamily	Elafin-like superfamily	Interproscan
IPR050938	Family	Collagen and Collagen-like Structural Proteins	Interproscan
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR008197	Domain	WAP-type 'four-disulfide core' domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37456	SI:CH211-266K2.1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0030414	Molecular Function	peptidase inhibitor activity	Interproscan