Gene detail

Detailed information of evm.model.Chr02.1840 in Hemicorallium imperiale

Genomic Location: Chr02:50900846...50912639
NR annotation: XP_028398554.1, citrate synthase, mitochondrial-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr02.1840 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZVY5	Citrate synthase, mitochondrial OS=Danio rerio OX=7955 GN=cs PE=2 SV=1
Q6S9V7	Citrate synthase, mitochondrial OS=Katsuwonus pelamis OX=8226 GN=cs PE=2 SV=1
Q29RK1	Citrate synthase, mitochondrial OS=Bos taurus OX=9913 GN=CS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004333 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00285 all species →	Citrate_synt	Citrate synthase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016142 all species →	Homologous_superfamily	Citrate synthase-like, large alpha subdomain	Interproscan
IPR010109 all species →	Family	Citrate synthase, eukaryotic-type	Interproscan
IPR002020 all species →	Family	Citrate synthase	Interproscan
IPR036969 all species →	Homologous_superfamily	Citrate synthase superfamily	Interproscan
IPR016143 all species →	Homologous_superfamily	Citrate synthase-like, small alpha subdomain	Interproscan
IPR019810 all species →	Active_site	Citrate synthase active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11739 all species →	CITRATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004108 all species →	Molecular Function	citrate (Si)-synthase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0006101 all species →	Biological Process	citrate metabolic process	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0046912 all species →	Molecular Function	acyltransferase activity, acyl groups converted into alkyl on transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01647	CS, gltA; citrate synthase	EC:2.3.3.1	Glyoxylate and dicarboxylate metabolism	ko00630	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.