Detailed information of evm.model.Chr02.1844 in Hemicorallium imperiale

Genomic Location: Chr02:51030286...51098850
NR annotation: XP_046846495.1, integrin alpha-8-like [Xenia sp. Carnegie-2017]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr02.1844 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P13612Integrin alpha-4 OS=Homo sapiens OX=9606 GN=ITGA4 PE=1 SV=3
B8JK39Integrin alpha-9 OS=Mus musculus OX=10090 GN=Itga9 PE=1 SV=1
Q13797Integrin alpha-9 OS=Homo sapiens OX=9606 GN=ITGA9 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000604 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20805
all species →		Integrin_A_Ig_2Integrin alpha Ig-like domain 2DomainInterproscan
PF01839
all species →		FG-GAPFG-GAP repeatRepeatInterproscan
PF20806
all species →		Integrin_A_Ig_3Integrin alpha Ig-like domain 3DomainInterproscan
PF08441
all species →		Integrin_A_Ig_1Integrin alpha Ig-like domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR048285
all species →		DomainIntegrin alpha, second immunoglobulin-like domainInterproscan
IPR032695
all species →		Homologous_superfamilyIntegrin domain superfamilyInterproscan
IPR013519
all species →		RepeatIntegrin alpha beta-propellorInterproscan
IPR000413
all species →		FamilyIntegrin alpha chainInterproscan
IPR028994
all species →		Homologous_superfamilyIntegrin alpha, N-terminalInterproscan
IPR013517
all species →		RepeatFG-GAP repeatInterproscan
IPR018184
all species →		Conserved_siteIntegrin alpha chain, C-terminal cytoplasmic region, conserved siteInterproscan
IPR048286
all species →		DomainIntegrin alpha, third immunoglobulin-like domainInterproscan
IPR013649
all species →		DomainIntegrin alpha, first immunoglubulin-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23220
all species →		INTEGRIN ALPHAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007155
all species →		Biological Processcell adhesionInterproscan
GO:0008305
all species →		Cellular Componentintegrin complexInterproscan
GO:0005178
all species →		Molecular Functionintegrin bindingInterproscan
GO:0007160
all species →		Biological Processcell-matrix adhesionInterproscan
GO:0007229
all species →		Biological Processintegrin-mediated signaling pathwayInterproscan
GO:0009897
all species →		Cellular Componentexternal side of plasma membraneInterproscan
GO:0033627
all species →		Biological Processcell adhesion mediated by integrinInterproscan
GO:0098609
all species →		Biological Processcell-cell adhesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr02.1844.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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