Detailed information of evm.model.Chr02.1872 in Hemicorallium imperiale

Genomic Location: Chr02:51720429...51769186
NR annotation: XP_028399481.1, tetratricopeptide repeat protein 21B-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr02.1872 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7Z4L5Tetratricopeptide repeat protein 21B OS=Homo sapiens OX=9606 GN=TTC21B PE=1 SV=2
Q0HA38Tetratricopeptide repeat protein 21B OS=Mus musculus OX=10090 GN=Ttc21b PE=1 SV=1
Q6INC1Tetratricopeptide repeat protein 21B OS=Xenopus laevis OX=8355 GN=ttc21b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002982 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14559
all species →		TPR_19Tetratricopeptide repeatRepeatInterproscan
PF13181
all species →		TPR_8Tetratricopeptide repeatRepeatInterproscan
PF13432
all species →		TPR_16Tetratricopeptide repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR040364
all species →		FamilyTetratricopeptide repeat protein 21A/21BInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14699
all species →		STI2 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0030991
all species →		Cellular Componentintraciliary transport particle AInterproscan
GO:0035721
all species →		Biological Processintraciliary retrograde transportInterproscan
GO:0061512
all species →		Biological Processprotein localization to ciliumInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19673TTC21B, IFT139B; tetratricopeptide repeat protein 21B-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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