Detailed information of evm.model.Chr02.1896_evm.model.Chr02.1897 in Hemicorallium imperiale

Genomic Location: Chr02:52386236...52420349
NR annotation: XP_028415687.1, LOW QUALITY PROTEIN: sterol regulatory element-binding protein cleavage-activating protein-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr02.1896_evm.model.Chr02.1897 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A0JPH4Sterol regulatory element-binding protein cleavage-activating protein OS=Xenopus laevis OX=8355 GN=scap PE=2 SV=1
Q5MNU5Sterol regulatory element-binding protein cleavage-activating protein OS=Sus scrofa OX=9823 GN=SCAP PE=2 SV=2
Q6GQT6Sterol regulatory element-binding protein cleavage-activating protein OS=Mus musculus OX=10090 GN=Scap PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004100 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan
PF12349
all species →		Sterol-sensingSterol-sensing domain of SREBP cleavage-activationFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR000731
all species →		DomainSterol-sensing domainInterproscan
IPR019775
all species →		Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR030225
all species →		FamilySterol regulatory element-binding protein cleavage-activating proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46378
all species →		STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000139
all species →		Cellular ComponentGolgi membraneInterproscan
GO:0005789
all species →		Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0032933
all species →		Biological ProcessSREBP signaling pathwayInterproscan
GO:0032934
all species →		Molecular Functionsterol bindingInterproscan
GO:0032936
all species →		Cellular ComponentSREBP-SCAP complexInterproscan
GO:0045540
all species →		Biological Processregulation of cholesterol biosynthetic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K26682SCAP; sterol regulatory element-binding protein cleavage-activating protein-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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