Gene detail

Detailed information of evm.model.Chr02.2178 in Hemicorallium imperiale

Genomic Location: Chr02:59113123...59130886
NR annotation: XP_028392000.1, ataxin-7-like protein 3 [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr02.2178 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AWT3	Ataxin-7-like protein 3 OS=Mus musculus OX=10090 GN=Atxn7l3 PE=1 SV=1
Q14CW9	Ataxin-7-like protein 3 OS=Homo sapiens OX=9606 GN=ATXN7L3 PE=1 SV=1
A1L209	Ataxin-7-like protein 3 OS=Danio rerio OX=7955 GN=atxn7l3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004922 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08209 all species →	Sgf11	Sgf11 (transcriptional regulation protein)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013243 all species →	Domain	SCA7 domain	Interproscan
IPR051078 all species →	Family	SAGA-associated factor 11	Interproscan
IPR013246 all species →	Family	SAGA complex, Sgf11 subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46367 all species →	ATAXIN-7-LIKE PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016578 all species →	Biological Process	obsolete histone deubiquitination	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0071819 all species →	Cellular Component	DUBm complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11363	SGF11; SAGA-associated factor 11	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.