Gene detail

Detailed information of evm.model.Chr02.2236 in Hemicorallium imperiale

Genomic Location: Chr02:60709629...60747652
NR annotation: XP_028395111.1, SWI/SNF complex subunit SMARCC1-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr02.2236 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TAQ2	SWI/SNF complex subunit SMARCC2 OS=Homo sapiens OX=9606 GN=SMARCC2 PE=1 SV=1
Q6PDG5	SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2
P97496	SWI/SNF complex subunit SMARCC1 OS=Mus musculus OX=10090 GN=Smarcc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004403 (this species only)
Transcription factor family	MYB · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan
PF16498 all species →	SWIRM-assoc_3	SWIRM-associated domain at the C-terminal	Family	Interproscan
PF04433 all species →	SWIRM	SWIRM domain	Domain	Interproscan
PF16496 all species →	SWIRM-assoc_2	SWIRM-associated domain at the N-terminal	Family	Interproscan
PF16495 all species →	SWIRM-assoc_1	SWIRM-associated region 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049898 all species →	Domain	MarR-like, BRCT and chromo domains module	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032448 all species →	Domain	SMARCC, SWIRM-associated domain	Interproscan
IPR007526 all species →	Domain	SWIRM domain	Interproscan
IPR017884 all species →	Domain	SANT domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR032450 all species →	Domain	SMARCC, N-terminal	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR032451 all species →	Domain	SMARCC, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12802 all species →	SWI/SNF COMPLEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11649	SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.