Gene detail

Detailed information of evm.model.Chr02.2290 in Hemicorallium imperiale

Genomic Location: Chr02:61959074...61980406
NR annotation: XP_028396914.1, synaptotagmin-7-like [Dendronephthya gigantea]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q56A18	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Rattus norvegicus OX=10116 GN=Smarce1 PE=1 SV=1
Q969G3	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Homo sapiens OX=9606 GN=SMARCE1 PE=1 SV=2
O54941	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 OS=Mus musculus OX=10090 GN=Smarce1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF00168	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008	Domain	C2 domain	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46232	SMARCE1 REGULATOR OF CHROMATIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016514	Cellular Component	SWI/SNF complex	Interproscan
GO:0016922	Molecular Function	nuclear receptor binding	Interproscan
GO:0031492	Molecular Function	nucleosomal DNA binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19905	SYT5; synaptotagmin-5	-	Membrane trafficking	ko04131	deepkoala