Detailed information of evm.model.Chr02.236 in Hemicorallium imperiale

Genomic Location: Chr02:5943555...5975169
NR annotation: CAB3977812.1, von Willebrand factor D and EGF domain-containing [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr02.236 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q28178Thrombospondin-1 OS=Bos taurus OX=9913 GN=THBS1 PE=2 SV=2
P07996Thrombospondin-1 OS=Homo sapiens OX=9606 GN=THBS1 PE=1 SV=2
P35441Thrombospondin-1 OS=Mus musculus OX=10090 GN=Thbs1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002852 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07974
all species →		EGF_2EGF-like domainDomainInterproscan
PF12661
all species →		hEGFHuman growth factor-like EGFDomainInterproscan
PF00090
all species →		TSP_1Thrombospondin type 1 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR013111
all species →		DomainEGF-like domain, extracellularInterproscan
IPR008993
all species →		Homologous_superfamilyTissue inhibitor of metalloproteinases-like, OB-foldInterproscan
IPR048287
all species →		DomainThrombospondin-like, N-terminal domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR013032
all species →		Conserved_siteEGF-like, conserved siteInterproscan
IPR036383
all species →		Homologous_superfamilyThrombospondin type-1 (TSP1) repeat superfamilyInterproscan
IPR000884
all species →		RepeatThrombospondin type-1 (TSP1) repeatInterproscan
IPR050969
all species →		FamilyDevelopmental Signaling ModulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14949
all species →		EGF-LIKE-DOMAIN, MULTIPLE 7, 8Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005102
all species →		Molecular Functionsignaling receptor bindingInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0009986
all species →		Cellular Componentcell surfaceInterproscan
GO:0048856
all species →		Biological Processanatomical structure developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr02.236.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP