Genomic Location: Chr02:64613583...64632495
NR annotation: CAB3978991.1, Hypothetical predicted protein [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr02.2416 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000147 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16977 all species → | ApeC | C-terminal domain of apextrin | Family | Interproscan |
| PF00431 all species → | CUB | CUB domain | Domain | Interproscan |
| PF05083 all species → | LST1 | LST-1 protein | Family | Interproscan |
| PF21314 all species → | TM_ErbB1 | Epidermal growth factor receptor transmembrane-juxtamembrane segment | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035914 all species → | Homologous_superfamily | Spermadhesin, CUB domain superfamily | Interproscan |
| IPR000859 all species → | Domain | CUB domain | Interproscan |
| IPR044912 all species → | Homologous_superfamily | Epidermal growth factor receptor, juxtamembrane domain | Interproscan |
| IPR031569 all species → | Domain | Apextrin, C-terminal domain | Interproscan |
| IPR007775 all species → | Family | Leukocyte-specific transcript 1, LST-1 | Interproscan |
| IPR049328 all species → | Domain | Epidermal growth factor receptor-like, transmembrane-juxtamembrane segment | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19324 all species → | PERFORIN-LIKE PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000902 all species → | Biological Process | cell morphogenesis | Interproscan |
| GO:0006955 all species → | Biological Process | immune response | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
evm.model.Chr02.2416.Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
