Gene detail

Detailed information of evm.model.Chr02.341 in Hemicorallium imperiale

Genomic Location: Chr02:8167707...8179018
NR annotation: XP_052218910.1, aprataxin-like [Dreissena polymorpha]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr02.341 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P61799	Aprataxin OS=Danio rerio OX=7955 GN=aptx PE=2 SV=1
P61798	Aprataxin (Fragment) OS=Gallus gallus OX=9031 GN=APTX PE=1 SV=1
P61800	Aprataxin OS=Takifugu rubripes OX=31033 GN=aptx PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010651 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16278 all species →	zf-C2HE	C2HE / C2H2 / C2HC zinc-binding finger	Domain	Interproscan
PF11969 all species →	DcpS_C	Scavenger mRNA decapping enzyme C-term binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036265 all species →	Homologous_superfamily	HIT-like superfamily	Interproscan
IPR032566 all species →	Domain	Aprataxin, C2HE/C2H2/C2HC zinc finger	Interproscan
IPR011146 all species →	Domain	HIT-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12486 all species →	APRATAXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000012 all species →	Biological Process	single strand break repair	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0033699 all species →	Molecular Function	DNA 5'-adenosine monophosphate hydrolase activity	Interproscan
GO:1990165 all species →	Molecular Function	single-strand break-containing DNA binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10863	APTX; aprataxin	EC:3.6.1.70 EC:3.6.1.71 EC:3.6.1.72	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.