Detailed information of evm.model.Chr02.960 in Hemicorallium imperiale

Genomic Location: Chr02:25318634...25348041
NR annotation: XP_028404568.1, phenylalanine--tRNA ligase alpha subunit-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr02.960 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7SYV0Phenylalanine--tRNA ligase alpha subunit B OS=Xenopus laevis OX=8355 GN=farsa-b PE=2 SV=1
Q1JPX3Phenylalanine--tRNA ligase alpha subunit OS=Danio rerio OX=7955 GN=farsa PE=2 SV=2
Q6AZG6Phenylalanine--tRNA ligase alpha subunit A OS=Xenopus laevis OX=8355 GN=farsa-a PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004071 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF18553
all species →		PheRS_DBD3PheRS DNA binding domain 3DomainInterproscan
PF01409
all species →		tRNA-synt_2dtRNA synthetases class II core domain (F)DomainInterproscan
PF18554
all species →		PheRS_DBD2PheRS DNA binding domain 2DomainInterproscan
PF18552
all species →		PheRS_DBD1PheRS DNA binding domain 1 DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040725
all species →		DomainPheRS, DNA binding domain 3Interproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR002319
all species →		DomainPhenylalanyl-tRNA synthetaseInterproscan
IPR040586
all species →		DomainPheRS DNA binding domain 2Interproscan
IPR004529
all species →		FamilyPhenylalanyl-tRNA synthetase, class IIc, alpha subunitInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR040724
all species →		DomainPheRS, DNA binding domain 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11538
all species →		PHENYLALANYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000049
all species →		Molecular FunctiontRNA bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0043039
all species →		Biological ProcesstRNA aminoacylationInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004826
all species →		Molecular Functionphenylalanine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006432
all species →		Biological Processphenylalanyl-tRNA aminoacylationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0009328
all species →		Cellular Componentphenylalanine-tRNA ligase complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01889FARSA, pheS; phenylalanyl-tRNA synthetase alpha chainEC:6.1.1.20
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP