Detailed information of evm.model.Chr03.1130 in Hemicorallium imperiale

Genomic Location: Chr03:16592361...16594906
NR annotation: CAB4003885.1, G2 M phase-specific E3 ubiquitin- ligase-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr03.1130 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
G0S9J5E3 ubiquitin-protein ligase RSP5 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=RSP5 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000580 (this species only)
Ubiquitin familyE3|E3 activity|HECT · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13240
all species →		zinc_ribbon_2zinc-ribbon domainDomainInterproscan
PF00632
all species →		HECTHECT-domain (ubiquitin-transferase)DomainInterproscan
PF02845
all species →		CUECUE domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003892
all species →		DomainUbiquitin system component CUEInterproscan
IPR026870
all species →		DomainZinc-ribbon domainInterproscan
IPR000569
all species →		DomainHECT domainInterproscan
IPR035983
all species →		Homologous_superfamilyHECT, E3 ligase catalytic domainInterproscan
IPR050409
all species →		FamilyE3 ubiquitin-protein ligaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11254
all species →		HECT DOMAIN UBIQUITIN-PROTEIN LIGASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22371G2H3; G2/M phase-specific E3 ubiquitin-protein ligaseEC:2.3.2.26
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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