Detailed information of evm.model.Chr04.1050 in Hemicorallium imperiale

Genomic Location: Chr04:21326672...21330481
NR annotation: XP_028396570.1, sin3 histone deacetylase corepressor complex component SDS3-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.1050 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A6H6W9Sin3 histone deacetylase corepressor complex component SDS3 OS=Bos taurus OX=9913 GN=SUDS3 PE=2 SV=1
Q9H7L9Sin3 histone deacetylase corepressor complex component SDS3 OS=Homo sapiens OX=9606 GN=SUDS3 PE=1 SV=2
Q8BR65Sin3 histone deacetylase corepressor complex component SDS3 OS=Mus musculus OX=10090 GN=Suds3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004599 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08598
all species →		Sds3Sds3-likeFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013907
all species →		FamilySds3-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21964
all species →		BREAST CANCER METASTASIS-SUPPRESSOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0042826
all species →		Molecular Functionhistone deacetylase bindingInterproscan
GO:0070822
all species →		Cellular ComponentSin3-type complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr04.1050.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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