Gene detail

Detailed information of evm.model.Chr04.1206 in Hemicorallium imperiale

Genomic Location: Chr04:23503731...23530804
NR annotation: CAB3978143.1, peripheral-type benzodiazepine receptor-associated 1-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8QFX1	RIMS-binding protein 2 OS=Gallus gallus OX=9031 GN=RIMBP2 PE=1 SV=1
Q7TNF8	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Mus musculus OX=10090 GN=Tspoap1 PE=2 SV=2
Q9JIR0	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Tspoap1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan
PF02183	HALZ	Homeobox associated leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR003106	Domain	Leucine zipper, homeobox-associated	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR035753	Domain	RIMS-binding protein, second SH3 domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR040325	Family	RIMS-binding protein 1/2/3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14234	RIM BINDING PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0007274	Biological Process	neuromuscular synaptic transmission	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19922	TSPOAP1, BZRAP1, RIMBP1; peripheral-type benzodiazepine receptor-associated protein 1	-	Membrane trafficking	ko04131	deepkoala