Detailed information of evm.model.Chr04.1260 in Hemicorallium imperiale

Genomic Location: Chr04:24381364...24383559
NR annotation: CAB3979072.1, Elongation factor Tu, mitochondrial [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.1260 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q0BUQ2Elongation factor Tu OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=tuf PE=3 SV=1
P49410Elongation factor Tu, mitochondrial OS=Bos taurus OX=9913 GN=TUFM PE=1 SV=1
Q2W2H3Elongation factor Tu OS=Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1) OX=342108 GN=tuf1 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003939 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03144
all species →		GTP_EFTU_D2Elongation factor Tu domain 2DomainInterproscan
PF03143
all species →		GTP_EFTU_D3Elongation factor Tu C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR009000
all species →		Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR033720
all species →		DomainElongation factor Tu, domain 2Interproscan
IPR004161
all species →		DomainTranslation elongation factor EFTu-like, domain 2Interproscan
IPR009001
all species →		Homologous_superfamilyTranslation elongation factor EF1A/initiation factor IF2gamma, C-terminalInterproscan
IPR004160
all species →		DomainTranslation elongation factor EFTu/EF1A, C-terminalInterproscan
IPR050055
all species →		FamilyElongation factor Tu GTPaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43721
all species →		ELONGATION FACTOR TU-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005525
all species →		Molecular FunctionGTP bindingInterproscan
GO:0003746
all species →		Molecular Functiontranslation elongation factor activityInterproscan
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0006414
all species →		Biological Processtranslational elongationInterproscan
GO:0070125
all species →		Biological Processmitochondrial translational elongationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr04.1260.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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