Gene detail

Detailed information of evm.model.Chr04.1275 in Hemicorallium imperiale

Genomic Location: Chr04:24666512...24711134
NR annotation: CAB3978428.1, mediator of RNA polymerase II transcription subunit 16 isoform X1 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr04.1275 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PGF3	Mediator of RNA polymerase II transcription subunit 16 OS=Mus musculus OX=10090 GN=Med16 PE=1 SV=2
Q9Y2X0	Mediator of RNA polymerase II transcription subunit 16 OS=Homo sapiens OX=9606 GN=MED16 PE=1 SV=2
Q08D69	Mediator of RNA polymerase II transcription subunit 16 OS=Xenopus tropicalis OX=8364 GN=med16 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20718 all species →	Med16_bridge	Mediator complex subunit 16, central helical bridge	Domain	Interproscan
PF20719 all species →	Med16_C	Mediator complex subunit 16, C-terminal	Domain	Interproscan
PF11635 all species →	Med16_N	Mediator complex subunit 16, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048616 all species →	Domain	Mediator of RNA polymerase II transcription subunit 16 , central helical bridge	Interproscan
IPR048339 all species →	Domain	Mediator complex subunit 16, C-terminal	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR021665 all species →	Domain	Mediator complex, subunit Med16, N-terminal	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR048338 all species →	Family	Mediator complex, subunit Med16	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13224 all species →	THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15159	MED16; mediator of RNA polymerase II transcription subunit 16	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.