Detailed information of evm.model.Chr04.681 in Hemicorallium imperiale

Genomic Location: Chr04:13736095...13763223
NR annotation: CAB4002563.1, Nuclear pore complex Nup88 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.681 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O08658Nuclear pore complex protein Nup88 OS=Rattus norvegicus OX=10116 GN=Nup88 PE=1 SV=1
Q8CEC0Nuclear pore complex protein Nup88 OS=Mus musculus OX=10090 GN=Nup88 PE=1 SV=1
A2CEI4Nucleoporin 88 OS=Danio rerio OX=7955 GN=nup88 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004306 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10168
all species →		Nup88Nuclear pore componentRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR019321
all species →		FamilyNucleoporin Nup88Interproscan
IPR037700
all species →		FamilyNucleoporin NUP88/NUP82Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13257
all species →		NUCLEOPORIN NUP84-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000055
all species →		Biological Processribosomal large subunit export from nucleusInterproscan
GO:0000056
all species →		Biological Processribosomal small subunit export from nucleusInterproscan
GO:0005643
all species →		Cellular Componentnuclear poreInterproscan
GO:0006406
all species →		Biological ProcessmRNA export from nucleusInterproscan
GO:0006606
all species →		Biological Processprotein import into nucleusInterproscan
GO:0006913
all species →		Biological Processnucleocytoplasmic transportInterproscan
GO:0017056
all species →		Molecular Functionstructural constituent of nuclear poreInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr04.681.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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