Detailed information of evm.model.Chr04.788 in Hemicorallium imperiale

Genomic Location: Chr04:16823099...16849333
NR annotation: XP_028396400.1, PHD finger protein 12-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.788 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q96QT6PHD finger protein 12 OS=Homo sapiens OX=9606 GN=PHF12 PE=1 SV=2
Q5SPL2PHD finger protein 12 OS=Mus musculus OX=10090 GN=Phf12 PE=1 SV=1
O43918Autoimmune regulator OS=Homo sapiens OX=9606 GN=AIRE PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005117 (this species only) · gene tree & orthology
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628
all species →		PHDPHD-fingerDomainInterproscan
PF16737
all species →		PHF12_MRG_bdPHD finger protein 12 MRG binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019787
all species →		DomainZinc finger, PHD-fingerInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR019786
all species →		Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR031966
all species →		DomainPHD finger protein 12, MRG binding domainInterproscan
IPR038098
all species →		Homologous_superfamilyPHD finger protein 12, MRG binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46309
all species →		PHD FINGER PROTEIN 12Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000122
all species →		Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0003714
all species →		Molecular Functiontranscription corepressor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0070822
all species →		Cellular ComponentSin3-type complexInterproscan
GO:0140110
all species →		Molecular Functiontranscription regulator activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr04.788.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP