Genomic Location: Chr04:18077077...18127123
NR annotation: CAB3993568.1, pelota homolog [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr04.836 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5XIP1 | Protein pelota homolog OS=Rattus norvegicus OX=10116 GN=Pelo PE=1 SV=1 |
| Q80X73 | Protein pelota homolog OS=Mus musculus OX=10090 GN=Pelo PE=1 SV=3 |
| Q58DV0 | Protein pelota homolog OS=Bos taurus OX=9913 GN=PELO PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003458 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03465 all species → | eRF1_3 | eRF1 domain 3 | Domain | Interproscan |
| PF03463 all species → | eRF1_1 | eRF1 domain 1 | Domain | Interproscan |
| PF03464 all species → | eRF1_2 | eRF1 domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005142 all species → | Domain | eRF1 domain 3 | Interproscan |
| IPR029064 all species → | Homologous_superfamily | Ribosomal protein eL30-like superfamily | Interproscan |
| IPR005140 all species → | Domain | eRF1 domain 1/Pelota-like | Interproscan |
| IPR042226 all species → | Homologous_superfamily | eRF1, domain 2 superfamily | Interproscan |
| IPR004405 all species → | Family | Translation release factor pelota | Interproscan |
| IPR005141 all species → | Domain | eRF1 domain 2 | Interproscan |
| IPR038069 all species → | Homologous_superfamily | Pelota/DOM34, N-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10853 all species → | PELOTA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0032790 all species → | Biological Process | ribosome disassembly | Interproscan |
| GO:0070481 all species → | Biological Process | nuclear-transcribed mRNA catabolic process, non-stop decay | Interproscan |
| GO:0070651 all species → | Biological Process | nonfunctional rRNA decay | Interproscan |
| GO:0070966 all species → | Biological Process | nuclear-transcribed mRNA catabolic process, no-go decay | Interproscan |
| GO:0071025 all species → | Biological Process | RNA surveillance | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06965 | PELO, DOM34, pelA; protein pelota | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Genes whose expression across the transcriptome samples of Hemicorallium imperiale tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Hemicorallium imperiale, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | not in the sequence table | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | not in the sequence table | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
