Genomic Location: Chr04:18400537...18425970
NR annotation: XP_028396734.1, pre-rRNA processing protein FTSJ3-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr04.848 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q5RAS1 | pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Pongo abelii OX=9601 GN=FTSJ3 PE=2 SV=1 |
| Q5RJT2 | pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Rattus norvegicus OX=10116 GN=Ftsj3 PE=1 SV=1 |
| Q9DBE9 | pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Mus musculus OX=10090 GN=Ftsj3 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004026 (this species only) |
| Ubiquitin family | E3|E3 activity RING|RING · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01728 all species → | FtsJ | FtsJ-like methyltransferase | Family | Interproscan |
| PF11861 all species → | DUF3381 | Ribosomal RNA methyltransferase Spb1, DUF3381 | Domain | Interproscan |
| PF07780 all species → | Spb1_C | Spb1 C-terminal domain | Domain | Interproscan |
| PF18212 all species → | ZNRF_3_ecto | ZNRF-3 Ectodomain | Domain | Interproscan |
| PF13639 all species → | zf-RING_2 | Ring finger domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002877 all species → | Domain | Ribosomal RNA methyltransferase, FtsJ domain | Interproscan |
| IPR001841 all species → | Domain | Zinc finger, RING-type | Interproscan |
| IPR028589 all species → | Family | AdoMet-dependent rRNA methyltransferase SPB1-like | Interproscan |
| IPR015507 all species → | Family | Ribosomal RNA large subunit methyltransferase E | Interproscan |
| IPR024576 all species → | Domain | Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381 | Interproscan |
| IPR029063 all species → | Homologous_superfamily | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR012920 all species → | Domain | Ribosomal RNA methyltransferase, SPB1-like, C-terminal | Interproscan |
| IPR040700 all species → | Domain | ZNRF-3, ectodomain | Interproscan |
| IPR051073 all species → | Family | ZNRF3/Arkadia E3 ubiquitin-protein ligases | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16200 all species → | RING ZINC FINGER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008168 all species → | Molecular Function | methyltransferase activity | Interproscan |
| GO:0032259 all species → | Biological Process | methylation | Interproscan |
| GO:0008649 all species → | Molecular Function | rRNA methyltransferase activity | Interproscan |
| GO:0031167 all species → | Biological Process | rRNA methylation | Interproscan |
| GO:0001510 all species → | Biological Process | RNA methylation | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006364 all species → | Biological Process | rRNA processing | Interproscan |
| GO:0006511 all species → | Biological Process | ubiquitin-dependent protein catabolic process | Interproscan |
| GO:0061630 all species → | Molecular Function | ubiquitin protein ligase activity | Interproscan |
evm.model.Chr04.848.
