Detailed information of evm.model.Chr04.848 in Hemicorallium imperiale

Genomic Location: Chr04:18400537...18425970
NR annotation: XP_028396734.1, pre-rRNA processing protein FTSJ3-like [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q5RAS1pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Pongo abelii OX=9601 GN=FTSJ3 PE=2 SV=1
Q5RJT2pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Rattus norvegicus OX=10116 GN=Ftsj3 PE=1 SV=1
Q9DBE9pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3 OS=Mus musculus OX=10090 GN=Ftsj3 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01728FtsJFtsJ-like methyltransferaseFamilyInterproscan
PF11861DUF3381Ribosomal RNA methyltransferase Spb1, DUF3381DomainInterproscan
PF07780Spb1_CSpb1 C-terminal domainDomainInterproscan
PF18212ZNRF_3_ectoZNRF-3 EctodomainDomainInterproscan
PF13639zf-RING_2Ring finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002877DomainRibosomal RNA methyltransferase, FtsJ domainInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR028589FamilyAdoMet-dependent rRNA methyltransferase SPB1-likeInterproscan
IPR015507FamilyRibosomal RNA large subunit methyltransferase EInterproscan
IPR024576DomainRibosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Interproscan
IPR029063Homologous_superfamilyS-adenosyl-L-methionine-dependent methyltransferase superfamilyInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR012920DomainRibosomal RNA methyltransferase, SPB1-like, C-terminalInterproscan
IPR040700DomainZNRF-3, ectodomainInterproscan
IPR051073FamilyZNRF3/Arkadia E3 ubiquitin-protein ligasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16200RING ZINC FINGERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008168Molecular Functionmethyltransferase activityInterproscan
GO:0032259Biological ProcessmethylationInterproscan
GO:0008649Molecular FunctionrRNA methyltransferase activityInterproscan
GO:0031167Biological ProcessrRNA methylationInterproscan
GO:0001510Biological ProcessRNA methylationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006364Biological ProcessrRNA processingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

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