Detailed information of evm.model.Chr04.854 in Hemicorallium imperiale

Genomic Location: Chr04:18479668...18500418
NR annotation: CAB3995122.1, mediator of RNA polymerase II transcription subunit 15 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.854 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NS15Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q924H2Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus OX=10090 GN=Med15 PE=1 SV=3
Q96RN5Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002801 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09606
all species →		Med15ARC105/Med15 mediator subunit N-terminal KIX domainDomainInterproscan
PF21539
all species →		Med15_CARC105/Med15 mediator subunit C-terminal domainDomainInterproscan
PF21538
all species →		Med15_MARC105/Med15 mediator subunit central domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019087
all species →		DomainMediator of RNA polymerase II transcription subunit 15, N-terminalInterproscan
IPR036529
all species →		Homologous_superfamilyCoactivator CBP, KIX domain superfamilyInterproscan
IPR048386
all species →		DomainARC105/Med15 mediator subunit, C-terminal domainInterproscan
IPR048385
all species →		DomainARC105/Med15 mediator subunit, central domainInterproscan

 PANTHER
No PANTHER signature was detected for evm.model.Chr04.854. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
GO termCategoryDescriptionSource
GO:0003712
all species →		Molecular Functiontranscription coregulator activityInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15157MED15; mediator of RNA polymerase II transcription subunit 15-Transcription machineryko03021deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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