Gene detail

Detailed information of evm.model.Chr04.862 in Hemicorallium imperiale

Genomic Location: Chr04:18556053...18580134
NR annotation: XP_028396656.1, myotubularin-related protein 3-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr04.862 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P57772	Selenocysteine-specific elongation factor OS=Homo sapiens OX=9606 GN=EEFSEC PE=1 SV=4
Q9JHW4	Selenocysteine-specific elongation factor OS=Mus musculus OX=10090 GN=Eefsec PE=1 SV=2
Q5PQT2	Phosphatidylinositol-3,5-bisphosphate 3-phosphatase MTMR3 OS=Rattus norvegicus OX=10116 GN=Mtmr3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007862 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03144 all species →	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF21208 all species →	euk_SelB_III	Selenocysteine-specific elongation factor, eukaryotes, 3rd domain	Domain	Interproscan
PF21131 all species →	eEFSec_4th	eEFSec C-terminal RIFT domain	Domain	Interproscan
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF06602 all species →	Myotub-related	Myotubularin-like phosphatase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004161 all species →	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR010569 all species →	Domain	Myotubularin-like, phosphatase domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR049393 all species →	Domain	Selenocysteine-specific elongation factor, 3rd domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049394 all species →	Domain	Selenocysteine-specific elongation factor, C-terminal RIFT domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR030564 all species →	Family	Myotubularin family	Interproscan
IPR046978 all species →	Domain	Myotubularin-related protein 4, FYVE domain	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10807 all species →	MYOTUBULARIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0004438 all species →	Molecular Function	phosphatidylinositol-3-phosphate phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0052629 all species →	Molecular Function	phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Chr04.862.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.