Genomic Location: Chr04:18830895...18833018
NR annotation: CAB4002345.1, E3 ubiquitin- ligase RGLG4-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr04.877 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q9SAL0 | E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1 |
| Q8LB88 | E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 SV=1 |
| Q9SS90 | E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009227 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07002 all species → | Copine | Copine | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002035 all species → | Domain | von Willebrand factor, type A | Interproscan |
| IPR052079 all species → | Family | E3 ubiquitin-ligases/Copine domain-containing protein | Interproscan |
| IPR036465 all species → | Homologous_superfamily | von Willebrand factor A-like domain superfamily | Interproscan |
| IPR010734 all species → | Domain | Copine, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45751 all species → | COPINE FAMILY PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004842 all species → | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0016567 all species → | Biological Process | protein ubiquitination | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16280 | RGLG; E3 ubiquitin-protein ligase RGLG | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
