Detailed information of evm.model.Chr04.921 in Hemicorallium imperiale

Genomic Location: Chr04:19560329...19562343
NR annotation: CAB3997661.1, homeobox cut-like isoform X3 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.921 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006911 (this species only)
Transcription factor familyHomeobox · all TF in this species
Transcription factor familyCUT · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan
PF02376
all species →		CUTCUT domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR003350
all species →		DomainCUT domainInterproscan
IPR051649
all species →		FamilyCUT Homeobox Domain-Containing ProteinInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR010982
all species →		Homologous_superfamilyLambda repressor-like, DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14057
all species →		TRANSCRIPTION FACTOR ONECUTInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr04.921.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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