Detailed information of evm.model.Chr04.927_evm.model.Chr04.928 in Hemicorallium imperiale

Genomic Location: Chr04:19611821...19639070
NR annotation: XP_028396462.1, clathrin heavy chain 1-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr04.927_evm.model.Chr04.928 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q68FD5Clathrin heavy chain 1 OS=Mus musculus OX=10090 GN=Cltc PE=1 SV=3
P49951Clathrin heavy chain 1 OS=Bos taurus OX=9913 GN=CLTC PE=1 SV=1
Q00610Clathrin heavy chain 1 OS=Homo sapiens OX=9606 GN=CLTC PE=1 SV=5
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005110 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09268
all species →		Clathrin-linkClathrin, heavy-chain linkerRepeatInterproscan
PF01394
all species →		Clathrin_propelClathrin propeller repeatRepeatInterproscan
PF00637
all species →		ClathrinRegion in Clathrin and VPSRepeatInterproscan
PF13838
all species →		Clathrin_H_linkClathrin-H-linkRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016341
all species →		FamilyClathrin, heavy chainInterproscan
IPR015348
all species →		DomainClathrin, heavy chain, linker, core motifInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR000547
all species →		RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR022365
all species →		RepeatClathrin, heavy chain, propeller repeatInterproscan
IPR016025
all species →		Homologous_superfamilyClathrin heavy chain, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10292
all species →		CLATHRIN HEAVY CHAIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0032051
all species →		Molecular Functionclathrin light chain bindingInterproscan
GO:0071439
all species →		Cellular Componentclathrin complexInterproscan
GO:0006898
all species →		Biological Processreceptor-mediated endocytosisInterproscan
GO:0045334
all species →		Cellular Componentclathrin-coated endocytic vesicleInterproscan
GO:0005198
all species →		Molecular Functionstructural molecule activityInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0030130
all species →		Cellular Componentclathrin coat of trans-Golgi network vesicleInterproscan
GO:0030132
all species →		Cellular Componentclathrin coat of coated pitInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K04646CLTC; clathrin heavy chain-Exosomeko04147deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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