Gene detail

Detailed information of evm.model.Chr04.984 in Hemicorallium imperiale

Genomic Location: Chr04:20595577...20622645
NR annotation: XP_028396654.1, neuronal acetylcholine receptor subunit alpha-9-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr04.984 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15822	Neuronal acetylcholine receptor subunit alpha-2 OS=Homo sapiens OX=9606 GN=CHRNA2 PE=1 SV=2
Q5IS52	Neuronal acetylcholine receptor subunit alpha-2 OS=Pan troglodytes OX=9598 GN=CHRNA2 PE=2 SV=1
P12389	Neuronal acetylcholine receptor subunit alpha-2 OS=Rattus norvegicus OX=10116 GN=Chrna2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001241 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21389 all species →	CASTOR1_ACT-like	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Domain	Interproscan
PF02931 all species →	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain	Family	Interproscan
PF02932 all species →	Neur_chan_memb	Neurotransmitter-gated ion-channel transmembrane region	Family	Interproscan
PF18700 all species →	Castor1_N	Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain	Domain	Interproscan
PF13840 all species →	ACT_7	ACT domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018000 all species →	Conserved_site	Neurotransmitter-gated ion-channel, conserved site	Interproscan
IPR026249 all species →	Family	CASTOR family	Interproscan
IPR049479 all species →	Domain	Cytosolic arginine sensor for mTORC1 subunit 1/2, ACT-like	Interproscan
IPR006202 all species →	Domain	Neurotransmitter-gated ion-channel ligand-binding domain	Interproscan
IPR038050 all species →	Homologous_superfamily	Neuronal acetylcholine receptor	Interproscan
IPR045865 all species →	Homologous_superfamily	ACT-like domain	Interproscan
IPR051719 all species →	Family	Cytosolic arginine sensor for mTORC1	Interproscan
IPR006029 all species →	Domain	Neurotransmitter-gated ion-channel transmembrane domain	Interproscan
IPR036734 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Interproscan
IPR040778 all species →	Domain	CASTOR1, N-terminal	Interproscan
IPR027795 all species →	Domain	CASTOR, ACT domain	Interproscan
IPR036719 all species →	Homologous_superfamily	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31131 all species →	CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005230 all species →	Molecular Function	extracellular ligand-gated monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05312	CHRNN; nicotinic acetylcholine receptor, invertebrate	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.