Detailed information of evm.model.Chr05.1076 in Hemicorallium imperiale

Genomic Location: Chr05:17988639...17992677
NR annotation: CAB3979979.1, rab9 effector with kelch motifs-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr05.1076 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q4V8F4Rab9 effector protein with kelch motifs OS=Rattus norvegicus OX=10116 GN=Rabepk PE=2 SV=1
Q8VCH5Rab9 effector protein with kelch motifs OS=Mus musculus OX=10090 GN=Rabepk PE=1 SV=2
Q6AXB2Rab9 effector protein with kelch motifs OS=Xenopus laevis OX=8355 GN=rabepk PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008149 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13854
all species →		Kelch_5Kelch motifRepeatInterproscan
PF13418
all species →		Kelch_4Galactose oxidase, central domainRepeatInterproscan
PF07646
all species →		Kelch_2Kelch motifRepeatInterproscan
PF01344
all species →		Kelch_1Kelch motifRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015915
all species →		Homologous_superfamilyKelch-type beta propellerInterproscan
IPR052124
all species →		FamilyRab9 effector with kelch motifsInterproscan
IPR011498
all species →		RepeatKelch repeat type 2Interproscan
IPR006652
all species →		RepeatKelch repeat type 1Interproscan
IPR011043
all species →		Homologous_superfamilyGalactose oxidase/kelch, beta-propellerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46647
all species →		RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K20285RABEPK; Rab9 effector protein with kelch motifs-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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