Detailed information of evm.model.Chr05.1097 in Hemicorallium imperiale

Genomic Location: Chr05:18415219...18418646
NR annotation: CAB3990315.1, Ubiquitin domain-containing 2 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr05.1097 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5EAE3Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1
Q640W6Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1
Q6DG43Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008889 (this species only) · gene tree & orthology
Ubiquitin familyULD|UBL|NEDD8 · all ubiquitin genes in this species
Ubiquitin familyULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species
Ubiquitin familyULD|UFD/UBQ|UBQ_PIM · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00240
all species →		ubiquitinUbiquitin familyDomainInterproscan
PF16455
all species →		UBDUbiquitin-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000626
all species →		DomainUbiquitin-like domainInterproscan
IPR029071
all species →		Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR038169
all species →		Homologous_superfamilyDC-UbP/UBTD2, N-terminal domain superfamilyInterproscan
IPR032752
all species →		DomainDC-UbP/UBTD2, N-terminal domainInterproscan
IPR039869
all species →		FamilyUbiquitin domain-containing protein 1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13609
all species →		UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr05.1097.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP