Gene detail

Detailed information of evm.model.Chr05.603 in Hemicorallium imperiale

Genomic Location: Chr05:11662640...11684175
NR annotation: CAB3976817.1, Hypothetical predicted protein [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr05.603 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8W8	Small ribosomal subunit protein mS39 OS=Pongo abelii OX=9601 GN=PTCD3 PE=2 SV=1
Q14C51	Small ribosomal subunit protein mS39 OS=Mus musculus OX=10090 GN=Ptcd3 PE=1 SV=2
Q2KI62	Small ribosomal subunit protein mS39 OS=Bos taurus OX=9913 GN=PTCD3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004283 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17177 all species →	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033443 all species →	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan
IPR037387 all species →	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276 all species →	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17659	PTCD3; pentatricopeptide repeat domain-containing protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.