Detailed information of evm.model.Chr05.863 in Hemicorallium imperiale

Genomic Location: Chr05:15374889...15376883
NR annotation: XP_028391349.1, pancreas/duodenum homeobox protein 1-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr05.863 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P31262Homeobox protein Hox-C5 (Fragment) OS=Notophthalmus viridescens OX=8316 PE=3 SV=1
O42365Homeobox protein Hox-A2b OS=Danio rerio OX=7955 GN=hoxa2b PE=2 SV=2
P81192Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=187800 GN=HOXA4 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000082 (this species only)
Transcription factor familyHomeobox · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000047
all species →		Conserved_siteHelix-turn-helix motifInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45664
all species →		PROTEIN ZERKNUELLT 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr05.863.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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