Detailed information of evm.model.Chr05.873 in Hemicorallium imperiale

Genomic Location: Chr05:15479780...15491213
NR annotation: XP_028391433.1, uncharacterized protein LOC114516216 [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr05.873 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
E2R9X2AT-rich interactive domain-containing protein 5B OS=Canis lupus familiaris OX=9615 GN=ARID5B PE=3 SV=1
E1BLP6AT-rich interactive domain-containing protein 5B OS=Bos taurus OX=9913 GN=ARID5B PE=3 SV=1
Q8BM75AT-rich interactive domain-containing protein 5B OS=Mus musculus OX=10090 GN=Arid5b PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004884 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01388
all species →		ARIDARID/BRIGHT DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043151
all species →		Homologous_superfamilyBromo adjacent homology (BAH) domain superfamilyInterproscan
IPR036431
all species →		Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR001606
all species →		DomainARID DNA-binding domainInterproscan
IPR051232
all species →		FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964
all species →		RBP-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0000976
all species →		Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr05.873.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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