Detailed information of evm.model.Chr05.901 in Hemicorallium imperiale

Genomic Location: Chr05:15800863...15811037
NR annotation: XP_028391080.1, E3 ubiquitin-protein ligase Mdm2-like [Dendronephthya gigantea]
Species abbreviation HIMPE · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr05.901 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2HJ21Protein Mdm4 OS=Bos taurus OX=9913 GN=MDM4 PE=2 SV=1
O35618Protein Mdm4 OS=Mus musculus OX=10090 GN=Mdm4 PE=1 SV=2
Q5XIN1Protein Mdm4 OS=Rattus norvegicus OX=10116 GN=Mdm4 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006295 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02201
all species →		SWIBSWIB/MDM2 domainDomainInterproscan
PF13920
all species →		zf-C3HC4_3Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003121
all species →		DomainSWIB/MDM2 domainInterproscan
IPR036443
all species →		Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR016495
all species →		Familyp53 negative regulator Mdm2/Mdm4Interproscan
IPR001876
all species →		DomainZinc finger, RanBP2-typeInterproscan
IPR036885
all species →		Homologous_superfamilySWIB/MDM2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46858
all species →		OS05G0521000 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007049
all species →		Biological Processcell cycleInterproscan
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0043066
all species →		Biological Processnegative regulation of apoptotic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0051726
all species →		Biological Processregulation of cell cycleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr05.901.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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