Gene detail

Detailed information of evm.model.Chr06.1048 in Hemicorallium imperiale

Genomic Location: Chr06:17919543...17943814
NR annotation: CAB4003232.1, catenin beta-like [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr06.1048 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35224	Catenin beta OS=Urechis caupo OX=6431 PE=2 SV=1
P35223	Catenin beta OS=Tripneustes gratilla OX=7673 PE=2 SV=1
P18824	Armadillo segment polarity protein OS=Drosophila melanogaster OX=7227 GN=arm PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006928 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan
PF01150 all species →	GDA1_CD39	GDA1/CD39 (nucleoside phosphatase) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013284 all species →	Family	Beta-catenin	Interproscan
IPR000407 all species →	Family	Nucleoside phosphatase GDA1/CD39	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45976 all species →	ARMADILLO SEGMENT POLARITY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0045296 all species →	Molecular Function	cadherin binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0016342 all species →	Cellular Component	catenin complex	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0035257 all species →	Molecular Function	nuclear receptor binding	Interproscan
GO:0045294 all species →	Molecular Function	alpha-catenin binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan
GO:0098609 all species →	Biological Process	cell-cell adhesion	Interproscan
GO:0140297 all species →	Molecular Function	DNA-binding transcription factor binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Chr06.1048.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.