Detailed information of evm.model.Chr06.1171 in Hemicorallium imperiale

Genomic Location: Chr06:19697406...19726218
NR annotation: XP_028408998.1, LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like [Dendronephthya gigantea]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P39059Collagen alpha-1(XV) chain OS=Homo sapiens OX=9606 GN=COL15A1 PE=1 SV=2
O35206Collagen alpha-1(XV) chain OS=Mus musculus OX=10090 GN=Col15a1 PE=1 SV=2
P39060Collagen alpha-1(XVIII) chain OS=Homo sapiens OX=9606 GN=COL18A1 PE=1 SV=5

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06482EndostatinCollagenase NC10 and EndostatinDomainInterproscan
PF20010Collagen_trimerCollagen trimerization domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010515DomainCollagenase NC10/endostatinInterproscan
IPR016186Homologous_superfamilyC-type lectin-like/link domain superfamilyInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR045463DomainCollagen type XV/XVIII, trimerization domainInterproscan
IPR016187Homologous_superfamilyC-type lectin foldInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR050149FamilyCollagen superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan

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