Gene detail

Detailed information of evm.model.Chr06.1182 in Hemicorallium imperiale

Genomic Location: Chr06:19821199...19829182
NR annotation: CAB3987783.1, carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr06.1182 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9PTJ6	CTD small phosphatase-like protein OS=Gallus gallus OX=9031 GN=NFI1 PE=2 SV=2
Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens OX=9606 GN=CTDSP1 PE=1 SV=1
P58465	CTD small phosphatase-like protein OS=Mus musculus OX=10090 GN=Ctdspl PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007094 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03031 all species →	NIF	NLI interacting factor-like phosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050365 all species →	Family	Mitochondrial import inner membrane translocase subunit TIM50	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR040078 all species →	Family	CTD small RNA polymerase II polypeptide A phosphatase-like	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR004274 all species →	Domain	FCP1 homology domain	Interproscan
IPR011948 all species →	Domain	Dullard phosphatase domain, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12210 all species →	DULLARD PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0008420 all species →	Molecular Function	RNA polymerase II CTD heptapeptide repeat phosphatase activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15731	CTDSP; carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase	EC:3.1.3.16	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.