Gene detail

Detailed information of evm.model.Chr06.1276 in Hemicorallium imperiale

Genomic Location: Chr06:20565267...20574900
NR annotation: XP_028409084.1, LIM domain only protein 3-like [Dendronephthya gigantea]

Gene Structure

Sequence

Uniprot

Gene family

Uniprot term	Description
Q8JFQ2	Rhombotin-1 OS=Danio rerio OX=7955 GN=lmo1 PE=2 SV=1
P25800	Rhombotin-1 OS=Homo sapiens OX=9606 GN=LMO1 PE=1 SV=1
Q3B8H4	Rhombotin-1 OS=Xenopus laevis OX=8355 GN=lmo1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00179	UQ_con	Ubiquitin-conjugating enzyme	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR000608	Domain	Ubiquitin-conjugating enzyme E2	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR050945	Family	LMO/RBTN Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45787	LD11652P	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0140297	Molecular Function	DNA-binding transcription factor binding	Interproscan