Gene detail

Detailed information of evm.model.Chr06.1548 in Hemicorallium imperiale

Genomic Location: Chr06:25097110...25114120
NR annotation: CAB3989790.1, Receptor-type tyrosine- phosphatase delta, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O97394	Protein sidekick OS=Drosophila melanogaster OX=7227 GN=sdk PE=1 SV=2
Q90478	Neural cell adhesion molecule L1.1 (Fragment) OS=Danio rerio OX=7955 GN=nadl1.1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00354	Pentaxin	Pentaxin family	Domain	Interproscan
PF07885	Ion_trans_2	Ion channel	Family	Interproscan
PF00060	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR001759	Family	Pentraxin-related	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013099	Domain	Potassium channel domain	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44170	PROTEIN SIDEKICK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan