Genomic Location: Chr06:25148956...25179419
NR annotation: XP_028393087.1, LOW QUALITY PROTEIN: DNA ligase 4-like [Dendronephthya gigantea]
Species Hemicorallium imperiale · all data for this species · gene families
evm.model.Chr06.1551 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.| UniProt accession | Description |
|---|---|
| Q90YB1 | DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2 |
| Q8BTF7 | DNA ligase 4 OS=Mus musculus OX=10090 GN=Lig4 PE=2 SV=2 |
| Q5R6L3 | DNA ligase 4 OS=Pongo abelii OX=9601 GN=LIG4 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002928 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16589 all species → | BRCT_2 | BRCT domain, a BRCA1 C-terminus domain | Family | Interproscan |
| PF04675 all species → | DNA_ligase_A_N | DNA ligase N terminus | Family | Interproscan |
| PF01068 all species → | DNA_ligase_A_M | ATP dependent DNA ligase domain | Domain | Interproscan |
| PF04679 all species → | DNA_ligase_A_C | ATP dependent DNA ligase C terminal region | Family | Interproscan |
| PF11411 all species → | DNA_ligase_IV | DNA ligase IV | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001357 all species → | Domain | BRCT domain | Interproscan |
| IPR036599 all species → | Homologous_superfamily | DNA ligase, ATP-dependent, N-terminal domain superfamily | Interproscan |
| IPR012308 all species → | Domain | DNA ligase, ATP-dependent, N-terminal | Interproscan |
| IPR036420 all species → | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR000977 all species → | Family | DNA ligase, ATP-dependent | Interproscan |
| IPR012310 all species → | Domain | DNA ligase, ATP-dependent, central | Interproscan |
| IPR044125 all species → | Domain | DNA Ligase 4, adenylation domain | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR012309 all species → | Domain | DNA ligase, ATP-dependent, C-terminal | Interproscan |
| IPR029710 all species → | Family | DNA ligase 4 | Interproscan |
| IPR021536 all species → | Domain | DNA ligase IV domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45997 all species → | DNA LIGASE 4 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003910 all species → | Molecular Function | DNA ligase (ATP) activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| GO:0006310 all species → | Biological Process | DNA recombination | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0071897 all species → | Biological Process | DNA biosynthetic process | Interproscan |
| GO:0005958 all species → | Cellular Component | DNA-dependent protein kinase-DNA ligase 4 complex | Interproscan |
| GO:0006297 all species → | Biological Process | nucleotide-excision repair, DNA gap filling | Interproscan |
| GO:0006303 all species → | Biological Process | double-strand break repair via nonhomologous end joining | Interproscan |
| GO:0032807 all species → | Cellular Component | DNA ligase IV complex | Interproscan |
| GO:0051103 all species → | Biological Process | DNA ligation involved in DNA repair | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10777 | LIG4, DNL4; DNA ligase 4 | EC:6.5.1.1 | DNA repair and recombination proteins | ko03400 | deepkoala |
