Gene detail

Detailed information of evm.model.Chr06.308 in Hemicorallium imperiale

Genomic Location: Chr06:4884987...4973474
NR annotation: CAB3979347.1, External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr06.308 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
M1BYJ7	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum OX=4113 GN=NDB1 PE=3 SV=1
Q9ST62	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum OX=4113 GN=NDB1 PE=1 SV=1
Q94BV7	External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NDB2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF00036 all species →	EF-hand_1	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR045024 all species →	Family	Alternative NADH dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43706 all species →	NADH DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0003954 all species →	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0006116 all species →	Biological Process	NADH oxidation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03885	ndh; NADH:quinone reductase (non-electrogenic)	EC:1.6.5.9	Oxidative phosphorylation	ko00190	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.