Gene detail

Detailed information of evm.model.Chr07.445 in Hemicorallium imperiale

Genomic Location: Chr07:10183066...10188187
NR annotation: CAB3992616.1, Elongation factor Ts, mitochondrial [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr07.445 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SPW6	Elongation factor Ts, mitochondrial OS=Nematostella vectensis OX=45351 GN=v1g215604 PE=3 SV=1
A1L2P7	Elongation factor Ts, mitochondrial OS=Xenopus laevis OX=8355 GN=tsfm PE=2 SV=1
C3YEM5	Elongation factor Ts, mitochondrial OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_84221 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007359 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00889 all species →	EF_TS	Elongation factor TS	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018101 all species →	Conserved_site	Translation elongation factor Ts, conserved site	Interproscan
IPR036402 all species →	Homologous_superfamily	Elongation factor Ts, dimerisation domain superfamily	Interproscan
IPR001816 all species →	Family	Translation elongation factor EFTs/EF1B	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR014039 all species →	Domain	Translation elongation factor EFTs/EF1B, dimerisation	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11741 all species →	ELONGATION FACTOR TS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003746 all species →	Molecular Function	translation elongation factor activity	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0070125 all species →	Biological Process	mitochondrial translational elongation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02357	tsf, TSFM; elongation factor Ts	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.