Gene detail

Detailed information of evm.model.Chr08.211 in Hemicorallium imperiale

Genomic Location: Chr08:5983607...5984992
NR annotation: CAB3982618.1, Hypothetical predicted protein [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr08.211 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NU60	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1
A2BIG9	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1
Q9BRA0	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo sapiens OX=9606 GN=NAA38 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007032 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01423 all species →	LSM	LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034110 all species →	Domain	LSM domain containing 1, Sm domain	Interproscan
IPR050914 all species →	Family	Small nuclear ribonucleoprotein-associated SmB/SmN	Interproscan
IPR001163 all species →	Domain	Sm domain, eukaryotic/archaea-type	Interproscan
IPR010920 all species →	Homologous_superfamily	LSM domain superfamily	Interproscan
IPR047575 all species →	Domain	Sm domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10701 all species →	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031417 all species →	Cellular Component	NatC complex	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20824	NAA38; N-alpha-acetyltransferase 38, NatC auxiliary subunit	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.