Gene detail

Detailed information of evm.model.Chr08.400 in Hemicorallium imperiale

Genomic Location: Chr08:9203264...9204085
NR annotation: CAB3987268.1, 39S ribosomal L9, mitochondrial [Paramuricea clavata]
Species abbreviation HIMPE · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

No sequence record for evm.model.Chr08.400 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYD2	Large ribosomal subunit protein bL9m OS=Homo sapiens OX=9606 GN=MRPL9 PE=1 SV=2
Q99N94	Large ribosomal subunit protein bL9m OS=Mus musculus OX=10090 GN=Mrpl9 PE=1 SV=2
Q641X9	Large ribosomal subunit protein bL9m OS=Rattus norvegicus OX=10116 GN=Mrpl9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009593 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03948 all species →	Ribosomal_L9_C	Ribosomal protein L9, C-terminal domain	Domain	Interproscan
PF01281 all species →	Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009027 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9/RNase H1, N-terminal	Interproscan
IPR020069 all species →	Domain	Large ribosomal subunit protein bL9, C-terminal	Interproscan
IPR036791 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, C-terminal domain superfamily	Interproscan
IPR020594 all species →	Family	Large ribosomal subunit protein bL9, bacteria/chloroplast	Interproscan
IPR000244 all species →	Family	Large ribosomal subunit protein bL9	Interproscan
IPR020070 all species →	Domain	Large ribosomal subunit protein bL9, N-terminal	Interproscan
IPR036935 all species →	Homologous_superfamily	Large ribosomal subunit protein bL9, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21368 all species →	50S RIBOSOMAL PROTEIN L9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02939	RP-L9, MRPL9, rplI; large subunit ribosomal protein L9	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.