Detailed information of evm.model.Chr08.506 in Hemicorallium imperiale

Genomic Location: Chr08:10592374...10592784
NR annotation: CAB4000317.1, SMG8 [Paramuricea clavata]
Species Hemicorallium imperiale · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
No sequence record for evm.model.Chr08.506 in HIMPE (the gene ID may belong to a different isoform naming scheme). Try the gene search.
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8ND04Nonsense-mediated mRNA decay factor SMG8 OS=Homo sapiens OX=9606 GN=SMG8 PE=1 SV=1
Q8VE18Nonsense-mediated mRNA decay factor SMG8 OS=Mus musculus OX=10090 GN=Smg8 PE=1 SV=1
A1A4J7Nonsense-mediated mRNA decay factor SMG8 OS=Bos taurus OX=9913 GN=SMG8 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005093 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF10220
all species →		Smg8_Smg9Smg8_Smg9 FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019354
all species →		FamilyNonsense-mediated mRNA decay factor SMG8-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13091
all species →		AMPLIFIED IN BREAST CANCER 2-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000184
all species →		Biological Processnuclear-transcribed mRNA catabolic process, nonsense-mediated decayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Chr08.506.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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